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Territorial Dispersion of Covid-19

When the pandemic arrived, how could we track the spread of Covid-19 across a territory as large as Rio Grande do Sul, and explain it to the public?
Period
2020–2022
Location
Rio Grande do Sul and the Porto Alegre Metropolitan Region, Brazil
Partners
ObservaDR/COVID-19 project (more than 20 researchers); PROPUR/UFRGS
My role
Built and maintained the spatial database for the 497 municipalities, ran the analyses and produced the maps; lead author of the metropolitan study.
Data
State and municipal health secretariats · Brasil.io open data · IBGE (Census 2010, REGIC 2018) · RAIS (2018) · MAPA establishment registry · FEPAM
Tools & methods
PostgreSQL/PostGIS · SQL · QGIS · Python · Excel · Adobe Illustrator

The challenge
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In 2020, case counts were published daily for each of the state’s 497 municipalities, but raw numbers did not explain why the virus moved the way it did. Researchers suspected the answer lay in how cities are connected: commuting, access to hospitals and the location of large workplaces.

Approach
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As part of the ObservaDR/COVID-19 project, I built a spatial database that joined daily epidemiological data to the structure of the urban network. We then applied the same approach in more detail to the Porto Alegre Metropolitan Region, the state’s most populated area.

From daily counts to territorial patterns
  1. Case data

    Daily confirmed cases and deaths (state health secretariat, Brasil.io)

  2. Database

    PostGIS database covering all 497 municipalities

  3. Context layers

    Commuting, urban hierarchy, hospital access, meatpacking plants, housing conditions

  4. Public output

    Maps for the public and peer-reviewed articles

Results
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  • In the metropolitan region, Porto Alegre, Canoas and Novo Hamburgo concentrated 56.3% of confirmed cases by April 2021. The virus spread along the BR-116 highway and the Trensurb rail corridor, the main commuting axes.
  • Mortality was higher in shoe-manufacturing municipalities, and municipalities with inadequate household infrastructure had higher transmission.
  • In the interior, cases concentrated in medium-sized cities, which are also regional health hubs, and vaccination clearly reduced deaths over the two years analyzed.
  • In Santa Cruz do Sul, the state’s controlled-distancing model reduced circulation and cases until December 2020, but did not prevent exponential growth in 2021.

Why it matters
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The project showed that pandemic response depends on urban planning: mobility, regional health networks and infrastructure inequality shaped who got sick. It also showed that open data and a well-structured spatial database can inform the public quickly during a crisis.

Publications (PT):

Maps
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Map of the Porto Alegre Metropolitan Region with municipalities shaded by population, population density grid, the road network and the Trensurb rail line
Porto Alegre Metropolitan Region: population, density, highways and Trensurb.
Map of commuting flows in the Porto Alegre Metropolitan Region, with thick red arrows converging on Porto Alegre from neighboring municipalities
Commuting flows for work in the metropolitan region.
Map of Rio Grande do Sul with circles sized by confirmed Covid-19 cases per municipality, over the urban network structure, with the largest circles around Porto Alegre
Confirmed cases by municipality and the urban network (September 2021).
Map of poultry slaughter employment and meatpacking plants in Rio Grande do Sul with confirmed Covid-19 cases in May 2020, showing overlap in the north and Taquari Valley
Poultry slaughter jobs, plants and early cases (May 2020).
Map of pork slaughter employment and meatpacking plants with confirmed Covid-19 cases in May 2020
Pork slaughter jobs, plants and early cases (May 2020).
Map of patient travel for high-complexity health care, with blue lines converging on Porto Alegre and regional hubs, and hospitals with intensive care units
Travel for high-complexity health care (REGIC 2018) and ICU hospitals.